Diversity and antagonistic potential of bacteria isolated from marine grass Halodule uninervis.
Identifieur interne : 000794 ( Main/Exploration ); précédent : 000793; suivant : 000795Diversity and antagonistic potential of bacteria isolated from marine grass Halodule uninervis.
Auteurs : Fehmida Bibi [Arabie saoudite] ; Muhammad Imran Naseer [Arabie saoudite] ; Ahmed Mohamad Hassan [Arabie saoudite] ; Muhammad Yasir [Arabie saoudite] ; Ahmed Abdullah Khalaf Al-Ghamdi [Arabie saoudite] ; Esam Ibrahim Azhar [Arabie saoudite]Source :
- 3 Biotech [ 2190-572X ] ; 2018.
Abstract
The aim of this study was to isolate bacteria from sea grass, Halodule uninervis collected from the coastal area of Jeddah, Saudi Arabia and to screen them for antifungal and enzymatic activities. We have isolated 162 rhizo and endophytic bacteria from soil, roots, and leaves of the sea grass. Antifungal screening of isolated bacteria revealed 19 strains (11.7%) capable to inhibit growth of four pathogenic fungi, Pythium ultimum, Phytophthora capsici, pyricularia oryzae, and Rhizoctonia solani in an in vitro assay. Taxonomic and phylogenetic analyses on the basis of 16S rRNA gene sequence revealed 97-99.9% sequence identity to recognized species. Bacillus, Staphylococcus, Jeotgalicoccus, and Planococcus, within the Phylum Firmicutes, Kocuria, Arthrobacter, Ornithinimicrobium and Corynebacterium (Actinobacteria), Sulfitobacter, Roseivivax, Ruegeria (α-Proteobacteria), Moraxella, and Vibrio (γ-Proteobacteria), were isolated. Strains belong to Phylum Firmicutes remain dominant antagonistic bacteria in this study. Further hydrolytic enzyme production was determined for these antagonistic bacteria. Our results demonstrated that the sea grass represents an important source of diverse antagonistic bacteria capable of producing antifungal metabolite.
DOI: 10.1007/s13205-017-1066-1
PubMed: 29354359
PubMed Central: PMC5752661
Affiliations:
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uniqKey="Bibi F" first="Fehmida" last="Bibi">Fehmida Bibi</name><affiliation wicri:level="1"><nlm:affiliation>1Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia.</nlm:affiliation><country xml:lang="fr">Arabie saoudite</country><wicri:regionArea>1Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah</wicri:regionArea><wicri:noRegion>Jeddah</wicri:noRegion></affiliation></author><author><name sortKey="Naseer, Muhammad Imran" sort="Naseer, Muhammad Imran" uniqKey="Naseer M" first="Muhammad Imran" last="Naseer">Muhammad Imran Naseer</name><affiliation wicri:level="1"><nlm:affiliation>3Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah, 21589 Saudi Arabia.</nlm:affiliation><country xml:lang="fr">Arabie saoudite</country><wicri:regionArea>3Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah</wicri:regionArea><wicri:noRegion>Jeddah</wicri:noRegion></affiliation></author><author><name sortKey="Hassan, Ahmed Mohamad" sort="Hassan, Ahmed Mohamad" uniqKey="Hassan A" first="Ahmed Mohamad" last="Hassan">Ahmed Mohamad Hassan</name><affiliation wicri:level="1"><nlm:affiliation>1Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia.</nlm:affiliation><country xml:lang="fr">Arabie saoudite</country><wicri:regionArea>1Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah</wicri:regionArea><wicri:noRegion>Jeddah</wicri:noRegion></affiliation></author><author><name sortKey="Yasir, Muhammad" sort="Yasir, Muhammad" uniqKey="Yasir M" first="Muhammad" last="Yasir">Muhammad Yasir</name><affiliation wicri:level="1"><nlm:affiliation>1Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia.</nlm:affiliation><country xml:lang="fr">Arabie saoudite</country><wicri:regionArea>1Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah</wicri:regionArea><wicri:noRegion>Jeddah</wicri:noRegion></affiliation></author><author><name sortKey="Al Ghamdi, Ahmed Abdullah Khalaf" sort="Al Ghamdi, Ahmed Abdullah Khalaf" uniqKey="Al Ghamdi A" first="Ahmed Abdullah Khalaf" last="Al-Ghamdi">Ahmed Abdullah Khalaf Al-Ghamdi</name><affiliation wicri:level="1"><nlm:affiliation>2Department of Medical Laboratory Technology, Faculty of Applied Medical Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.</nlm:affiliation><country xml:lang="fr">Arabie saoudite</country><wicri:regionArea>2Department of Medical Laboratory Technology, Faculty of Applied Medical Sciences, King Abdulaziz University, Jeddah</wicri:regionArea><wicri:noRegion>Jeddah</wicri:noRegion></affiliation></author><author><name sortKey="Azhar, Esam Ibrahim" sort="Azhar, Esam Ibrahim" uniqKey="Azhar E" first="Esam Ibrahim" last="Azhar">Esam Ibrahim Azhar</name><affiliation wicri:level="1"><nlm:affiliation>1Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia.</nlm:affiliation><country xml:lang="fr">Arabie saoudite</country><wicri:regionArea>1Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah</wicri:regionArea><wicri:noRegion>Jeddah</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>2Department of Medical Laboratory Technology, Faculty of Applied Medical Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.</nlm:affiliation><country xml:lang="fr">Arabie saoudite</country><wicri:regionArea>2Department of Medical Laboratory Technology, Faculty of Applied Medical Sciences, King Abdulaziz University, Jeddah</wicri:regionArea><wicri:noRegion>Jeddah</wicri:noRegion></affiliation></author></analytic><series><title level="j">3 Biotech</title><idno type="ISSN">2190-572X</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The aim of this study was to isolate bacteria from sea grass, <i>Halodule uninervis</i> collected from the coastal area of Jeddah, Saudi Arabia and to screen them for antifungal and enzymatic activities. We have isolated 162 rhizo and endophytic bacteria from soil, roots, and leaves of the sea grass. Antifungal screening of isolated bacteria revealed 19 strains (11.7%) capable to inhibit growth of four pathogenic fungi, <i>Pythium ultimum</i>, <i>Phytophthora capsici</i>, <i>pyricularia oryzae,</i> and <i>Rhizoctonia solani</i> in an in vitro assay. Taxonomic and phylogenetic analyses on the basis of 16S rRNA gene sequence revealed 97-99.9% sequence identity to recognized species. <i>Bacillus</i>, <i>Staphylococcus</i>, <i>Jeotgalicoccus,</i> and <i>Planococcus</i>, within the Phylum Firmicutes, <i>Kocuria</i>, <i>Arthrobacter</i>, <i>Ornithinimicrobium</i> and <i>Corynebacterium</i> (Actinobacteria), <i>Sulfitobacter</i>, <i>Roseivivax</i>, <i>Ruegeria</i> (α-Proteobacteria), <i>Moraxella,</i> and <i>Vibrio</i> (γ-Proteobacteria), were isolated. Strains belong to Phylum Firmicutes remain dominant antagonistic bacteria in this study. Further hydrolytic enzyme production was determined for these antagonistic bacteria. Our results demonstrated that the sea grass represents an important source of diverse antagonistic bacteria capable of producing antifungal metabolite.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">29354359</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">2190-572X</ISSN><JournalIssue CitedMedium="Print"><Volume>8</Volume><Issue>1</Issue><PubDate><Year>2018</Year><Month>Jan</Month></PubDate></JournalIssue><Title>3 Biotech</Title><ISOAbbreviation>3 Biotech</ISOAbbreviation></Journal><ArticleTitle>Diversity and antagonistic potential of bacteria isolated from marine grass <i>Halodule uninervis</i>.</ArticleTitle><Pagination><MedlinePgn>48</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s13205-017-1066-1</ELocationID><Abstract><AbstractText>The aim of this study was to isolate bacteria from sea grass, <i>Halodule uninervis</i> collected from the coastal area of Jeddah, Saudi Arabia and to screen them for antifungal and enzymatic activities. We have isolated 162 rhizo and endophytic bacteria from soil, roots, and leaves of the sea grass. Antifungal screening of isolated bacteria revealed 19 strains (11.7%) capable to inhibit growth of four pathogenic fungi, <i>Pythium ultimum</i>, <i>Phytophthora capsici</i>, <i>pyricularia oryzae,</i> and <i>Rhizoctonia solani</i> in an in vitro assay. Taxonomic and phylogenetic analyses on the basis of 16S rRNA gene sequence revealed 97-99.9% sequence identity to recognized species. <i>Bacillus</i>, <i>Staphylococcus</i>, <i>Jeotgalicoccus,</i> and <i>Planococcus</i>, within the Phylum Firmicutes, <i>Kocuria</i>, <i>Arthrobacter</i>, <i>Ornithinimicrobium</i> and <i>Corynebacterium</i> (Actinobacteria), <i>Sulfitobacter</i>, <i>Roseivivax</i>, <i>Ruegeria</i> (α-Proteobacteria), <i>Moraxella,</i> and <i>Vibrio</i> (γ-Proteobacteria), were isolated. Strains belong to Phylum Firmicutes remain dominant antagonistic bacteria in this study. Further hydrolytic enzyme production was determined for these antagonistic bacteria. Our results demonstrated that the sea grass represents an important source of diverse antagonistic bacteria capable of producing antifungal metabolite.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bibi</LastName><ForeName>Fehmida</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>1Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia.</Affiliation><Identifier Source="ISNI">0000 0001 0619 1117</Identifier><Identifier Source="GRID">grid.412125.1</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Naseer</LastName><ForeName>Muhammad Imran</ForeName><Initials>MI</Initials><AffiliationInfo><Affiliation>3Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah, 21589 Saudi Arabia.</Affiliation><Identifier Source="ISNI">0000 0001 0619 1117</Identifier><Identifier Source="GRID">grid.412125.1</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hassan</LastName><ForeName>Ahmed Mohamad</ForeName><Initials>AM</Initials><AffiliationInfo><Affiliation>1Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia.</Affiliation><Identifier Source="ISNI">0000 0001 0619 1117</Identifier><Identifier Source="GRID">grid.412125.1</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yasir</LastName><ForeName>Muhammad</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>1Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia.</Affiliation><Identifier Source="ISNI">0000 0001 0619 1117</Identifier><Identifier Source="GRID">grid.412125.1</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Al-Ghamdi</LastName><ForeName>Ahmed Abdullah Khalaf</ForeName><Initials>AAK</Initials><AffiliationInfo><Affiliation>2Department of Medical Laboratory Technology, Faculty of Applied Medical Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.</Affiliation><Identifier Source="ISNI">0000 0001 0619 1117</Identifier><Identifier Source="GRID">grid.412125.1</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Azhar</LastName><ForeName>Esam Ibrahim</ForeName><Initials>EI</Initials><AffiliationInfo><Affiliation>1Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia.</Affiliation><Identifier Source="ISNI">0000 0001 0619 1117</Identifier><Identifier Source="GRID">grid.412125.1</Identifier></AffiliationInfo><AffiliationInfo><Affiliation>2Department of Medical Laboratory Technology, Faculty of Applied Medical Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.</Affiliation><Identifier Source="ISNI">0000 0001 0619 1117</Identifier><Identifier Source="GRID">grid.412125.1</Identifier></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>01</Month><Day>03</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>3 Biotech</MedlineTA><NlmUniqueID>101565857</NlmUniqueID><ISSNLinking>2190-5738</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">16S rRNA gene sequence</Keyword><Keyword MajorTopicYN="N">Antagonistic bacteria</Keyword><Keyword MajorTopicYN="N">Pathogenic fungi</Keyword><Keyword MajorTopicYN="N">Phylogenetic analysis</Keyword><Keyword MajorTopicYN="N">Sea grass</Keyword></KeywordList><CoiStatement>Compliance with ethical standardsThe authors declare that they have no conflict of interests.</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year><Month>09</Month><Day>21</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>12</Month><Day>26</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>1</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>1</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>1</Month><Day>23</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">29354359</ArticleId><ArticleId IdType="doi">10.1007/s13205-017-1066-1</ArticleId><ArticleId IdType="pii">1066</ArticleId><ArticleId IdType="pmc">PMC5752661</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Mar Drugs. 2015 Jan 07;13(1):202-21</Citation><ArticleIdList><ArticleId 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IdType="pubmed">19709190</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Arabie saoudite</li></country></list><tree><country name="Arabie saoudite"><noRegion><name sortKey="Bibi, Fehmida" sort="Bibi, Fehmida" uniqKey="Bibi F" first="Fehmida" last="Bibi">Fehmida Bibi</name></noRegion><name sortKey="Al Ghamdi, Ahmed Abdullah Khalaf" sort="Al Ghamdi, Ahmed Abdullah Khalaf" uniqKey="Al Ghamdi A" first="Ahmed Abdullah Khalaf" last="Al-Ghamdi">Ahmed Abdullah Khalaf Al-Ghamdi</name><name sortKey="Azhar, Esam Ibrahim" sort="Azhar, Esam Ibrahim" uniqKey="Azhar E" first="Esam Ibrahim" last="Azhar">Esam Ibrahim Azhar</name><name sortKey="Azhar, Esam Ibrahim" sort="Azhar, Esam Ibrahim" uniqKey="Azhar E" first="Esam Ibrahim" last="Azhar">Esam Ibrahim Azhar</name><name sortKey="Hassan, Ahmed Mohamad" sort="Hassan, Ahmed Mohamad" uniqKey="Hassan A" first="Ahmed Mohamad" last="Hassan">Ahmed Mohamad Hassan</name><name sortKey="Naseer, Muhammad Imran" sort="Naseer, Muhammad Imran" uniqKey="Naseer M" first="Muhammad Imran" last="Naseer">Muhammad Imran Naseer</name><name sortKey="Yasir, Muhammad" sort="Yasir, Muhammad" uniqKey="Yasir M" first="Muhammad" last="Yasir">Muhammad Yasir</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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